halophFGD

Basic Information

Locus ID: SOLCI001368300

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: transporter arsB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold16548	6266	8172	+	SOLCI001368300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.51	60,719.56 Da	32.01	114.25	0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01117	YbiR_permease	28	556	4.73931E-110	-
Pfam	PF03600	Citrate transporter	28	504	4.3E-53	IPR004680

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G02260.1	Divalent ion symporter.
RefSeq	XP_015077426.1	silicon efflux transporter LSI2-like [Solanum pennellii]
Swiss-Prot	Q10SY9	Silicon efflux transporter LSI2 OS=Oryza sativa subsp. japonica OX=39947 GN=LSI2 PE=1 SV=1
TrEMBL	A0A6N2AKM6	CitMHS domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004614 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13967, jg13968, jg2282
Aizoaceae	Mesembryanthemum crystallinum	1	gene_3228
Amaranthaceae	Atriplex hortensis	1	Ah018846
Amaranthaceae	Beta vulgaris	1	BVRB_3g055010
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg6518
Amaranthaceae	Salicornia europaea	1	Seu_jg15400
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006492
Amaranthaceae	Suaeda glauca	2	Sgl01947, Sgl07102
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000002025, gene:ENSEOMG00000029389 ... gene:ENSEOMG00000043591
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0003210, CQ.Regalona.r1.3BG0003400
Anacardiaceae	Pistacia vera	5	pistato.v30183040, pistato.v30183050, pistato.v30183070 ... pistato.v30183080, pistato.v30183170
Apiaceae	Apium graveolens	1	Ag2G02030
Arecaceae	Cocos nucifera	8	COCNU_07G009770, COCNU_07G011320, COCNU_07G011330 ... COCNU_08G010780, COCNU_09G008290, COCNU_10G007450, COCNU_10G008440, COCNU_10G008450
Arecaceae	Phoenix dactylifera	8	gene-LOC103698921, gene-LOC103705488, gene-LOC103710354 ... gene-LOC103713335, gene-LOC103713336, gene-LOC103719557, gene-LOC103719558, gene-LOC103721631
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.1854.V1.1
Asteraceae	Flaveria trinervia	2	Ftri4G18497, Ftri8G09810
Brassicaceae	Arabidopsis thaliana	1	AT1G02260.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007447m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g01330.v2.2
Brassicaceae	Brassica nigra	1	BniB02g000060.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G1459
Casuarinaceae	Casuarina glauca	2	Cgl09G1552, Cgl09G1553
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2755
Plantaginaceae	Plantago ovata	1	Pov_00040988
Plumbaginaceae	Limonium bicolor	4	Lb1G03957, Lb1G04007, Lb3G18920, Lb3G18921
Poaceae	Echinochloa crus-galli	16	AH01.2013, AH01.3012, AH01.4970, AH01.5018, AH07.3986 ... BH01.2216, BH01.2217, BH01.3346, BH01.4909, BH07.3801, CH01.2311, CH01.3593, CH01.5511, CH07.3859, Contig866.34, Contig931.39
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0115680, gene-QOZ80_2AG0126340 ... gene-QOZ80_2AG0150940, gene-QOZ80_2BG0169530, gene-QOZ80_2BG0181980, gene-QOZ80_2BG0206370, gene-QOZ80_3AG0230410, gene-QOZ80_3AG0233670, gene-QOZ80_3BG0294240, gene-QOZ80_3BG0297450
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0039240.1, HORVU.MOREX.r3.1HG0055620.1 ... HORVU.MOREX.r3.4HG0407900.1, HORVU.MOREX.r3.4HG0414490.1, HORVU.MOREX.r3.6HG0631090.1
Poaceae	Lolium multiflorum	8	gene-QYE76_011322, gene-QYE76_012462, gene-QYE76_012503 ... gene-QYE76_026441, gene-QYE76_026442, gene-QYE76_067983, gene-QYE76_070769, gene-QYE76_071762
Poaceae	Oryza coarctata	10	Oco03G025680, Oco04G026160, Oco05G000400, Oco05G002880 ... Oco06G000390, Oco06G002890, Oco19G005160, Oco19G009490, Oco20G005090, Oco20G009370
Poaceae	Oryza sativa	5	LOC_Os02g57620.1, LOC_Os03g01700.1, LOC_Os03g05390.6 ... LOC_Os10g31040.3, LOC_Os10g39980.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G220300, gene-BS78_01G295100 ... gene-BS78_01G480900, gene-BS78_01G513400, gene-BS78_04G324100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100054, Pt_Chr0100075, Pt_Chr0105826, Pt_Chr0502478 ... Pt_Chr0502509, Pt_Chr0503109, Pt_Chr0503157, Pt_Chr0604538, Pt_Chr0605616
Poaceae	Sporobolus alterniflorus	11	Chr01G037270, Chr06G013580, Chr07G007010, Chr09G004320 ... Chr09G026590, Chr12G000310, Chr12G002100, Chr13G000530, Chr13G020620, Chr15G014310, Chr27G000250
Poaceae	Thinopyrum elongatum	7	Tel1E01G263700, Tel1E01G356500, Tel4E01G518700 ... Tel4E01G592000, Tel6E01G697800, Tel6E01G732700, Tel7E01G030100
Poaceae	Triticum dicoccoides	11	gene_TRIDC1AG021400, gene_TRIDC1AG031270 ... gene_TRIDC1BG026120, gene_TRIDC1BG036690, gene_TRIDC4AG055460, gene_TRIDC4BG053030, gene_TRIDC4BG060480, gene_TRIDC5AG075160, gene_TRIDC5AG075170, gene_TRIDC6AG059080, gene_TRIDC6BG069900
Poaceae	Triticum aestivum	15	TraesCS1A02G142400.1, TraesCS1A02G207300.1 ... TraesCS1B02G159400.1, TraesCS1B02G221100.1, TraesCS1D02G141400.1, TraesCS1D02G210500.1, TraesCS4A02G412500.1, TraesCS4B02G312600.1, TraesCS4B02G361900.1, TraesCS4D02G310100.1, TraesCS4D02G354900.1, TraesCS5A02G529900.1, TraesCS6A02G402000.1, TraesCS6B02G444100.2, TraesCS6D02G385600.1
Poaceae	Zea mays	6	Zm00001eb000580_P001, Zm00001eb003830_P002 ... Zm00001eb022890_P001, Zm00001eb046960_P001, Zm00001eb191060_P001, Zm00001eb222400_P001
Poaceae	Zoysia japonica	9	nbis-gene-21284, nbis-gene-2903, nbis-gene-3202 ... nbis-gene-36255, nbis-gene-39776, nbis-gene-4509, nbis-gene-47012, nbis-gene-4783, nbis-gene-4784
Poaceae	Zoysia macrostachya	8	Zma_g12854, Zma_g13320, Zma_g15630, Zma_g17444, Zma_g2071 ... Zma_g2279, Zma_g4425, Zma_g4614
Portulacaceae	Portulaca oleracea	3	evm.TU.LG10.357, evm.TU.LG11.1648, evm.TU.LG17.352
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1414 ... evm.TU.Scaffold_14_RagTag.172
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12703, nbisL1-mrna-18218
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16221, nbisL1-mrna-16237
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22424, nbisL1-mrna-8537, nbisL1-mrna-8538
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000007l.151, add.evm.TU.utg000007l.152 ... add.evm.TU.utg000007l.159, evm.TU.utg000007l.289, evm.TU.utg000010l.389
Rhizophoraceae	Kandelia obovata	1	Maker00008978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1092, nbisL1-mrna-16032
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10910, nbisL1-mrna-20573
Salicaceae	Populus euphratica	7	populus_peu24738, populus_peu24739, populus_peu29307 ... populus_peu29308, populus_peu29309, populus_peu30669, populus_peu34421
Solanaceae	Lycium barbarum	2	gene-LOC132631945, gene-LOC132639353
Solanaceae	Solanum chilense	2	SOLCI001368300, SOLCI002735300
Solanaceae	Solanum pennellii	2	gene-LOC107013857, gene-LOC107021305
Tamaricaceae	Reaumuria soongarica	1	gene_10802
Tamaricaceae	Tamarix chinensis	2	TC06G2360, TC08G1564