Basic Information
Locus ID:
SOLCI001357700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1649 | 55871 | 58565 | + | SOLCI001357700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 44,013.93 Da | 45.62 | 74.00 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 199 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025888788.1 | E3 ubiquitin protein ligase DRIP1-like [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2BW20 | SWIB domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004576 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610900, gene-LOC132610901 |
| Solanaceae | Solanum chilense | 1 | SOLCI001357700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107030463, gene-LOC107030865, gene-LOC114076095 |