Basic Information
Locus ID:
SOLCI001353000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1645 | 145702 | 147500 | + | SOLCI001353000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 44,880.03 Da | 48.07 | 94.92 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 25 | 223 | 3.51882E-137 | - |
| CDD | cd18787 | SF2_C_DEAD | 234 | 364 | 7.2248E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 46 | 207 | 2.1E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 355 | 6.2E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 90 | 375 | 6.13E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 230 | 394 | 1.7E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 229 | 1.0E-67 | IPR027417 |
| SMART | SM00490 | helicmild6 | 274 | 355 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 40 | 237 | 4.2E-58 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 394 | 25.855438 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 21 | 49 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 222 | 29.924574 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 168 | 176 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_015085128.1 | eukaryotic initiation factor 4A-2-like [Solanum pennellii] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BSD8 | Eukaryotic initiation factor 4A-11 OS=Solanum chilense OX=4083 GN=EJD97_004560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology