Basic Information
Locus ID:
SOLCI001345400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold164 | 147543 | 165183 | + | SOLCI001345400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 111,032.14 Da | 46.88 | 80.82 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 264 | 593 | 2.81916E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 794 | 949 | 9.68246E-55 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 709 | 746 | 2.5E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 843 | 939 | 1.4E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 285 | 671 | 8.5E-70 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 601 | 996 | 2.76E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 249 | 593 | 7.58E-46 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 705 | 766 | 3.76E-12 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 608 | 997 | 4.4E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 480 | 606 | 2.7E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 354 | 445 | 8.9E-12 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 782 | 3.1E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 234 | 324 | 1.3E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 260 | 570 | 2.0E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 709 | 747 | 0.0061 | IPR001841 |
| SMART | SM00490 | helicmild6 | 856 | 939 | 2.1E-20 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 829 | 992 | 14.019406 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 709 | 745 | 11.102496 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 279 | 555 | 12.231831 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 724 | 733 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 480 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015066881.1 | helicase-like transcription factor CHR28 isoform X2 [Solanum pennellii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CF70 | Helicase-like transcription factor CHR28 OS=Solanum chilense OX=4083 GN=EJD97_004543 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology