Basic Information
Locus ID:
SOLCI001336200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
TIR1
Description:
Transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1635 | 37449 | 40828 | + | SOLCI001336200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 65,626.12 Da | 53.61 | 94.47 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 3 | 43 | 1.4E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 1.3E-25 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 37 | 1.96E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 65 | 530 | 3.4E-35 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 3.4E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 572 | 7.1E-183 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 56.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 9.2E-7 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 0.74 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 61.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 360.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_015087943.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Solanum pennellii] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BYK6 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology