halophFGD

Basic Information

Locus ID: SOLCI001269100

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold1598	49446	49892	-	SOLCI001269100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.82	16,910.52 Da	63.14	50.13	-0.94

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	109	148	-	-
Coils	Coil	Coil	55	89	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_027773482.1	uncharacterized protein LOC107022511 [Solanum pennellii]	0
TrEMBL	A0A6N2BZE4	MADS-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004308 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	1	Sgl36013
Solanaceae	Lycium barbarum	35	gene-LOC132601393, gene-LOC132607984, gene-LOC132608722 ... gene-LOC132609224, gene-LOC132609302, gene-LOC132611234, gene-LOC132611941, gene-LOC132613978, gene-LOC132614665, gene-LOC132615671, gene-LOC132615801, gene-LOC132619604, gene-LOC132621734, gene-LOC132622069, gene-LOC132622860, gene-LOC132622882, gene-LOC132626142, gene-LOC132626297, gene-LOC132626339, gene-LOC132626920, gene-LOC132628059, gene-LOC132628417, gene-LOC132630341, gene-LOC132630489, gene-LOC132631997, gene-LOC132632561, gene-LOC132633354, gene-LOC132633974, gene-LOC132634287, gene-LOC132634816, gene-LOC132638656, gene-LOC132640762, gene-LOC132642262, gene-LOC132643705, gene-LOC132645439
Solanaceae	Solanum chilense	11	SOLCI000202400, SOLCI000775100, SOLCI001269100 ... SOLCI001439800, SOLCI001474700, SOLCI001797900, SOLCI003609200, SOLCI004403100, SOLCI004908000, SOLCI005474300, SOLCI007071200
Solanaceae	Solanum pennellii	18	gene-LOC107001376, gene-LOC107003998, gene-LOC107006315 ... gene-LOC107006441, gene-LOC107013896, gene-LOC107016359, gene-LOC107018803, gene-LOC107019733, gene-LOC107019992, gene-LOC107022180, gene-LOC107022328, gene-LOC107022511, gene-LOC107028418, gene-LOC107028568, gene-LOC107030960, gene-LOC107032167, gene-LOC114076060, gene-LOC114077131