Basic Information
Locus ID:
SOLCI001256100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1590 | 112843 | 120445 | - | SOLCI001256100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 65,019.45 Da | 38.20 | 97.77 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 465 | 526 | 5.75738E-9 | IPR002048 |
| CDD | cd00051 | EFh | 501 | 568 | 1.26834E-12 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 15 | 299 | 2.8125E-112 | - |
| Pfam | PF13499 | EF-hand domain pair | 499 | 568 | 8.7E-14 | IPR002048 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 297 | 441 | 3.5E-26 | IPR001245 |
| Pfam | PF13202 | EF hand | 468 | 484 | 0.026 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 15 | 293 | 1.8E-59 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 293 | 2.43E-75 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 297 | 448 | 7.82E-48 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 446 | 575 | 7.57E-28 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 466 | 575 | 1.4E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 295 | 4.7E-74 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 296 | 460 | 9.2E-48 | - |
| SMART | SM00054 | efh_1 | 464 | 492 | 0.091 | IPR002048 |
| SMART | SM00220 | serkin_6 | 294 | 525 | 8.0E-25 | IPR000719 |
| SMART | SM00054 | efh_1 | 500 | 528 | 6.2E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 542 | 570 | 6.2E-7 | IPR002048 |
| SMART | SM00220 | serkin_6 | 15 | 293 | 3.1E-82 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 538 | 573 | 14.457615 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 289 | 584 | 18.944519 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 460 | 495 | 10.496468 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 496 | 531 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 15 | 301 | 45.784985 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 509 | 521 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 158 | 170 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 473 | 485 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 21 | 44 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 360 | 372 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 551 | 563 | - | IPR018247 |
| PRINTS | PR00450 | Recoverin family signature | 468 | 489 | 3.1E-6 | - |
| PRINTS | PR00450 | Recoverin family signature | 514 | 532 | 3.1E-6 | - |
| PRINTS | PR00450 | Recoverin family signature | 492 | 511 | 3.1E-6 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_004230058.1 | calcium and calcium/calmodulin-dependent serine/threonine-protein kinase-like [Solanum lycopersicum] | 0 |
| A0AAR7 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Lotus japonicus OX=34305 GN=CCAMK PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BT41 | Calcium-and calmodulin-dependent protein kinase OS=Solanum chilense OX=4083 GN=EJD97_004257 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168840 |
| Apiaceae | Apium graveolens | 1 | Ag3G02085 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G005670, COCNU_04G005700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709055 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G25598 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1578 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1608 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1013 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006959, Pov_00014745 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1968, BH05.2092, CH05.2164 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0368830, gene-QOZ80_5BG0416380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0069960.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013966 |
| Poaceae | Oryza coarctata | 2 | Oco09G012740, Oco10G012820 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g41090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G240800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504440, Pt_Chr0504501 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G012590, Chr22G005170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G495900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG045650, gene_TRIDC1BG051680 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G307200.1, TraesCS1B02G318000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb200350_P004, Zm00001eb306730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25330 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28476 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1112 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6503 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21100 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017089 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11027, nbisL1-mrna-21129, nbisL1-mrna-21130 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13317 |
| Salicaceae | Populus euphratica | 2 | populus_peu06012, populus_peu19879 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645338 |
| Solanaceae | Solanum chilense | 1 | SOLCI001256100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028598 |