Basic Information
Locus ID:
SOLCI001227200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1575 | 154362 | 156608 | - | SOLCI001227200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 72,081.59 Da | 33.87 | 95.21 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 77 | 1.7E-4 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 349 | 616 | 1.2E-33 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 214 | 1.76E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 350 | 622 | 7.62E-54 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 421 | 642 | 3.8E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 222 | 1.1E-37 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 318 | 419 | 3.1E-15 | - |
| SMART | SM00220 | serkin_6 | 345 | 621 | 2.3E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 345 | 621 | 31.848862 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 351 | 373 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 638 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20190.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015086105.1 | probable inactive receptor kinase At2g26730 [Solanum pennellii] | 0 |
| Q9LJY0 | Pollen receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=PRK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BWY5 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28469, jg28470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102030 |
| Apiaceae | Apium graveolens | 3 | Ag3G00986, Ag6G00829, Ag9G00333 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712491, gene-LOC103720324 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3496.V1.1, AsparagusV1_08.2208.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G09226, Ftri12G31623, Ftri12G33467, Ftri7G19365 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0661 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11640, gene.Thate06g07950 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.248 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002091, Pov_00019849, Pov_00019850, Pov_00039828 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.2167, Contig328.4 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112150, gene-QOZ80_2BG0165550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0046210.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011668, gene-QYE76_011793, gene-QYE76_043862 |
| Poaceae | Oryza coarctata | 2 | Oco19G006840, Oco20G006820 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66040.1, LOC_Os10g35040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G190900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502701, Pt_Chr0502716 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030410, Chr09G001740, Chr15G021780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G302300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025340, gene_TRIDC1BG030460 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G165600.1, TraesCS1B02G182300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb044900_P006 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43938 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15229 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1569 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3650 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4601 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18957 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.371 |
| Salicaceae | Populus euphratica | 7 | populus_peu02536, populus_peu02538, populus_peu09853 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600179, gene-LOC132632451 |
| Solanaceae | Solanum chilense | 2 | SOLCI001227200, SOLCI005915700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013989, gene-LOC107029243 |