Basic Information
Locus ID:
SOLCI001222600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Rho GTPase-activating protein 7-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1573 | 4611 | 19459 | + | SOLCI001222600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 88,475.39 Da | 56.46 | 72.80 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 108 | 245 | 8.38517E-34 | - |
| Pfam | PF00620 | RhoGAP domain | 108 | 252 | 1.1E-30 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 539 | 619 | 2.5E-21 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 7 | 50 | 2.68E-5 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 108 | 302 | 6.47E-34 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 77 | 301 | 1.5E-40 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 105 | 296 | 3.2E-26 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 99 | 299 | 29.502565 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 695 | - | - |
| Coils | Coil | Coil | 128 | 148 | - | - |
| Coils | Coil | Coil | 588 | 622 | - | - |
| Coils | Coil | Coil | 749 | 769 | - | - |
| Coils | Coil | Coil | 529 | 563 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_015060855.1 | rho GTPase-activating protein 7-like isoform X2 [Solanum pennellii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BU30 | Rho-GAP domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_004101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology