Basic Information
Locus ID:
SOLCI001215500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Kelch repeat-containing F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold157 | 104590 | 105678 | + | SOLCI001215500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 40,378.62 Da | 36.42 | 81.77 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 41 | 5.0E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 111 | 154 | 3.6E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 168 | 203 | 1.9E-5 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 59 | 1.07E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 80 | 333 | 1.7E-40 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 43 | 1.8E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 44 | 354 | 1.0E-34 | IPR015915 |
| SMART | SM00612 | kelc_smart | 170 | 217 | 1.7E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 119 | 168 | 0.077 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_004242212.1 | F-box/kelch-repeat protein At1g80440-like [Solanum lycopersicum] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CCK7 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_004064 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology