Basic Information
Locus ID:
SOLCI001175500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1544 | 39783 | 53243 | - | SOLCI001175500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 73,521.86 Da | 46.38 | 76.08 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 391 | 668 | 1.75467E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 460 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 392 | 419 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 633 | 668 | 0.0036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 584 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 381 | 668 | 6.6E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 515 | 669 | 1.5E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 364 | 514 | 1.4E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 464 | 504 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 419 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 584 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 543 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 669 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 421 | 460 | 3.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 626 | 29.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 637 | 669 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 513 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 637 | 669 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 428 | 460 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 428 | 460 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 428 | 9.03805 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 361 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019067849.1 | uncharacterized protein LOC101255055 [Solanum lycopersicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BYB5 | WD_REPEATS_REGION domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology