Basic Information
Locus ID:
SOLCI001142400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1523 | 75377 | 76731 | - | SOLCI001142400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 47,197.44 Da | 31.07 | 99.54 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 237 | 279 | 3.8E-5 | IPR006527 |
| Pfam | PF12937 | F-box-like | 16 | 59 | 2.0E-5 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 125 | 294 | 3.53E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 67 | 1.15E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 65 | 2.0E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 296 | 3.2E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 59 | 11.166616 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47340.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015078598.1 | putative F-box protein At1g32420 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2C0B6 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003848 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599762 |
| Solanaceae | Solanum chilense | 3 | SOLCI000907300, SOLCI001142300, SOLCI001142400 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107022514, gene-LOC107022919, gene-LOC114074350 ... |