Basic Information
Locus ID:
SOLCI001142300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1523 | 73169 | 74474 | + | SOLCI001142300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 46,113.43 Da | 34.27 | 100.22 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 229 | 335 | 3.6E-9 | IPR006527 |
| Pfam | PF12937 | F-box-like | 9 | 46 | 8.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 89 | 6.54E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 61 | 5.7E-7 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 129 | 355 | 4.6E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 53 | 10.848683 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47340.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_019069780.2 | uncharacterized protein LOC104648134 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2BXF8 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599762 |
| Solanaceae | Solanum chilense | 3 | SOLCI000907300, SOLCI001142300, SOLCI001142400 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107022514, gene-LOC107022919, gene-LOC114074350 ... |