Basic Information
Locus ID:
SOLCI001079400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1492 | 46659 | 48011 | - | SOLCI001079400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 50,187.05 Da | 42.85 | 108.64 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 76 | 2.52741E-23 | - |
| Pfam | PF04564 | U-box domain | 29 | 108 | 1.3E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 127 | 428 | 1.07E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 113 | 4.95E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 114 | 9.0E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 116 | 442 | 7.7E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 32 | 103 | 2.8E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 110 | 27.361517 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | NP_001234240.1 | Avr9/Cf-9 rapidly elicited protein [Solanum lycopersicum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BXR2 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_003627 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology