Basic Information
Locus ID:
SOLCI001075800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1490 | 91782 | 92906 | + | SOLCI001075800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 42,826.11 Da | 42.62 | 85.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 43 | 2.2E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 212 | 308 | 8.0E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 76 | 2.09E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 44 | 1.5E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 0.0013 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 103 | 305 | 2.4E-24 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015081539.2 | putative F-box protein At1g47300 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2BYV5 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619443, gene-LOC132619444, gene-LOC132628912 |
| Solanaceae | Solanum chilense | 3 | SOLCI001075800, SOLCI004757200, SOLCI004757300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107019849, gene-LOC107025258, gene-LOC107026181 |