Basic Information
Locus ID:
SOLCI001066700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1486 | 137629 | 141090 | + | SOLCI001066700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 129,788.71 Da | 36.22 | 86.99 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 516 | 784 | 8.5911E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 516 | 783 | 3.2E-45 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 53 | 419 | 1.1E-42 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 903 | 1140 | 2.7E-20 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 849 | 1140 | 1.66E-35 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 486 | 783 | 6.47E-76 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 50 | 206 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 953 | 1152 | 1.3E-31 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 473 | 586 | 2.2E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 851 | 951 | 5.1E-12 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 234 | 420 | 5.1E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 587 | 797 | 2.6E-59 | - |
| SMART | SM00220 | serkin_6 | 510 | 788 | 9.9E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 510 | 787 | 37.205647 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 875 | 1144 | 15.48169 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 632 | 644 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_019067666.1 | receptor-like protein kinase FERONIA [Solanum lycopersicum] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BYX6 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003562 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri18G05091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028085 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624729, gene-LOC132625058 |
| Solanaceae | Solanum chilense | 1 | SOLCI001066700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009272 |