Basic Information
Locus ID:
SOLCI001044200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold14748 | 1923 | 2366 | - | SOLCI001044200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 17,062.62 Da | 49.90 | 87.35 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 52 | 95 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 102 | 1.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 103 | 3.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 53 | 94 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 95 | 12.297489 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_010315048.1 | RING-H2 finger protein ATL10-like [Solanum lycopersicum] | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2AP75 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_003496 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16509, jg26749, jg29766 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023356 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl16842 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G33835 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G44578.1, AT2G44581.1, AT3G60966.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001745m.g.v1.0, Thhalv10006444m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g12620.v2.2, Sp4g26660.v2.2, Sp5g03040.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g001970.2N, BniB06g002990.2N, BniB06g062760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2274 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10897 |
| Poaceae | Oryza coarctata | 1 | Oco10G012280 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.132 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28425, nbisL1-mrna-8164 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14024 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000034l.11 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018803 |
| Rhizophoraceae | Rhizophora apiculata | 8 | nbisL1-mrna-17598, nbisL1-mrna-17613, nbisL1-mrna-22800 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22931 |
| Solanaceae | Solanum chilense | 2 | SOLCI001044200, SOLCI003768800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027701 |