Basic Information
Locus ID:
SOLCI001041500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1473 | 103711 | 109865 | - | SOLCI001041500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 77,015.96 Da | 51.08 | 64.23 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 22 | 52 | 3.55581E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 372 | 501 | 2.14576E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 178 | 346 | 2.6E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 383 | 492 | 1.4E-33 | IPR001650 |
| Pfam | PF00397 | WW domain | 21 | 51 | 1.6E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 508 | 5.55E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.12E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 363 | 534 | 6.9E-59 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 69 | 6.5E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 128 | 362 | 2.2E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 172 | 375 | 3.7E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 20 | 53 | 1.8E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 412 | 492 | 4.0E-34 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.7233 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 531 | 24.989025 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 358 | 30.339542 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 153 | 181 | 10.185193 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 304 | 312 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 122 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_015065877.1 | ATP-dependent RNA helicase-like protein DB10 [Solanum pennellii] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C0X7 | ATP-dependent RNA helicase-like protein DB10 OS=Solanum chilense OX=4083 GN=EJD97_003487 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology