Basic Information
Locus ID:
SOLCI001037100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1471 | 18180 | 18701 | + | SOLCI001037100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 19,883.97 Da | 71.98 | 103.12 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 118 | 161 | 5.05671E-18 | - |
| Pfam | PF13639 | Ring finger domain | 118 | 161 | 1.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 167 | 4.95E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 170 | 1.7E-21 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 115 | 169 | 0.0037 | - |
| SMART | SM00184 | ring_2 | 119 | 160 | 8.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 161 | 12.577796 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_017234498.1 | PREDICTED: RING-H2 finger protein ATL2 [Daucus carota subsp. sativus] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BVZ1 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003469 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16665 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037620 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207260 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025997 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78741, Sgl78759, Sgl81210 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005500, CQ.Regalona.r1.9BG0016650 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013640 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710389 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G20145 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1846 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1903 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g20610 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.1063, evm.TU.LG11.1206 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016325, Pov_00025555 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016546 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26486 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60353.2, evm.TU.60354.3 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24689, nbisL1-mrna-30065 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15485, nbisL1-mrna-15679 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16315, nbisL1-mrna-19414 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.238, add.evm.TU.utg000027l.237 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015911, Maker00017836 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18513, nbisL1-mrna-18916 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11643, nbisL1-mrna-20838 |
| Salicaceae | Populus euphratica | 2 | populus_peu01739, populus_peu36071 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604961 |
| Solanaceae | Solanum chilense | 1 | SOLCI001037100 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2701, TC03G0061 |