halophFGD

Basic Information

Locus ID: SOLCI001032000

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold14683	2409	5129	+	SOLCI001032000

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.35	103,098.68 Da	49.98	66.61	-1.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	355	496	3.5E-37	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	666	710	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	156	176	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	779	818	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	638	652	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	557	588	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	94	114	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	801	818	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	841	906	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	557	573	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	611	652	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	841	861	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	673	710	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	779	800	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	154	176	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	886	906	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	277	303	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	617	637	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	277	293	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	87	125	-	-
Coils	Coil	Coil	552	572	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_019069073.1	uncharacterized protein LOC109120127 [Solanum lycopersicum]	0
TrEMBL	A0A6N2AMH3	DUF4283 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003458 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933