Basic Information
Locus ID:
SOLCI000985600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1443 | 67805 | 69010 | + | SOLCI000985600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 33,648.22 Da | 43.49 | 64.80 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15492 | PHD_BRPF_JADE_like | 110 | 158 | 3.81393E-17 | - |
| CDD | cd15571 | ePHD | 173 | 282 | 3.76175E-29 | - |
| Pfam | PF00628 | PHD-finger | 110 | 159 | 5.5E-12 | IPR019787 |
| Pfam | PF13832 | PHD-zinc-finger like domain | 172 | 280 | 5.5E-29 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 98 | 165 | 2.88E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 167 | 9.2E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 285 | 8.3E-22 | IPR013083 |
| SMART | SM00249 | PHD_3 | 228 | 283 | 5.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 110 | 159 | 1.5E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 108 | 161 | 10.1308 | IPR019787 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 170 | 283 | 24.48105 | IPR034732 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14740.2 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015081020.1 | peregrin [Solanum pennellii] | 0 |
| B2RRD7 | Peregrin OS=Mus musculus OX=10090 GN=Brpf1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BUN8 | PHD-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_003288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21208 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12603 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007527, Ah039183 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19068, Sbi_jg37499 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5341 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012309 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22165, Sgl27295 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000011268, gene:ENSEOMG00000041958 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016980, CQ.Regalona.r1.4BG0017360 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30163170, pistato.v30163260 |
| Apiaceae | Apium graveolens | 1 | Ag2G00050 |
| Arecaceae | Cocos nucifera | 1 | scaffold007600G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720818 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G01745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14740.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021064m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g12970.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g050310.2N, BniB07g054720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0864 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0990, Cgl01G0994 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g02500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g15740 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1335, evm.TU.LG05.1339 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009500 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34943 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.385, BH02.411, CH02.457 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012440, gene-QOZ80_1BG0061110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0237870.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050263 |
| Poaceae | Oryza coarctata | 2 | Oco01G003600, Oco02G003620 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G037900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200070 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G009610, Chr02G020290, Chr02G020360, Chr03G005940 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G195600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG014090, gene_TRIDC3BG018650 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G113700.1, TraesCS3B02G133100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb122030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13248 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7755 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1116 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.144 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11115 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9789 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.89 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013345 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9111 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15334 |
| Salicaceae | Populus euphratica | 3 | populus_peu00688, populus_peu17748, populus_peu37171 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618849 |
| Solanaceae | Solanum chilense | 1 | SOLCI000985600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024543 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.676_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0032 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09010.v3.1 |