Basic Information
Locus ID:
SOLCI000869100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1381 | 72890 | 75473 | + | SOLCI000869100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 59,596.84 Da | 52.56 | 48.23 | -1.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 497 | 528 | 5.8E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 396 | 481 | 1.2E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 396 | 481 | 1.8E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 454 | - | - |
| Coils | Coil | Coil | 434 | 461 | - | - |
| Coils | Coil | Coil | 392 | 422 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_004229383.1 | uncharacterized protein LOC101265365 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2BUU8 | PAPA-1 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_002949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology