Basic Information
Locus ID:
SOLCI000856800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Topless-related protein 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1374 | 22008 | 32140 | - | SOLCI000856800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 124,577.29 Da | 43.21 | 83.76 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 484 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 945 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 830 | 1093 | 2.65E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 658 | 1.24E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 539 | 695 | 2.4E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 737 | 959 | 3.6E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 536 | 1.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 960 | 1099 | 2.1E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 8.9E-6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 619 | 660 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 437 | 8.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 8.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1051 | 1092 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 824 | 860 | 340.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.8E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 995 | 1037 | 15.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 948 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 954 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 485 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 343 | 385 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.62804 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 594 | 625 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.021325 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_004230269.1 | topless-related protein 3 isoform X3 [Solanum lycopersicum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BVH4 | Topless-related protein 3-like OS=Solanum chilense OX=4083 GN=EJD97_002906 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology