Basic Information
Locus ID:
SOLCI000844400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold13691 | 2596 | 3921 | + | SOLCI000844400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 49,860.26 Da | 45.29 | 105.17 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 75 | 3.15615E-23 | - |
| Pfam | PF04564 | U-box domain | 29 | 100 | 4.8E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 105 | 5.5E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 125 | 419 | 2.41E-16 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 133 | 420 | 1.1E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 106 | 9.6E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 32 | 95 | 4.7E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 102 | 33.005074 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004236923.1 | U-box domain-containing protein 21 [Solanum lycopersicum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AND1 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_002869 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology