Basic Information
Locus ID:
SOLCI000829600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1361 | 5256 | 18971 | - | SOLCI000829600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 76,123.94 Da | 53.61 | 78.88 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 170 | 315 | 3.78716E-63 | - |
| CDD | cd17920 | DEXHc_RecQ | 1 | 169 | 1.18943E-85 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 190 | 304 | 8.4E-13 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 1 | 149 | 8.4E-13 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 319 | 390 | 3.6E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 19 | 327 | 1.7E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 169 | 3.1E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 170 | 408 | 1.7E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 213 | 306 | 5.9E-14 | IPR001650 |
| SMART | SM00487 | ultradead3 | 1 | 178 | 1.7E-12 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 1 | 393 | 9.7E-126 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 162 | 22.165922 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 189 | 346 | 14.57212 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 685 | - | - |
| Coils | Coil | Coil | 465 | 485 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_010323995.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Solanum lycopersicum] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BXB5 | ATP-dependent DNA helicase OS=Solanum chilense OX=4083 GN=EJD97_002821 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology