Basic Information
Locus ID:
SOLCI000782800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
SYMRK
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1332 | 90056 | 95699 | + | SOLCI000782800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 101,718.29 Da | 42.71 | 92.74 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12819 | Malectin-like domain | 37 | 350 | 1.0E-44 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 586 | 840 | 5.6E-32 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 560 | 841 | 7.24E-61 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 548 | 658 | 1.2E-29 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 187 | 352 | 7.8E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 659 | 859 | 1.7E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 361 | 498 | 4.7E-6 | IPR032675 |
| SMART | SM00220 | serkin_6 | 585 | 846 | 2.6E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 583 | 878 | 24.371975 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 589 | 611 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 906 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48740.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | NP_001234869.1 | symbiosis receptor-like kinase precursor [Solanum lycopersicum] | 0 |
| Q8L4H4 | Nodulation receptor kinase OS=Medicago truncatula OX=3880 GN=NORK PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2C3Z0 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_002675 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17317 |
| Apiaceae | Apium graveolens | 3 | Ag4G01225, Ag5G00375, Ag7G00972 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014740 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714442 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1047.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32454 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0389 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10102 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2655 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030007 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3441, BH03.3596, CH03.3800 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0573170, gene-QOZ80_7BG0604470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0133680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040451, gene-QYE76_040484 |
| Poaceae | Oryza coarctata | 2 | Oco13G010350, Oco14G010990 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g38070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G319400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304399, Pt_Chr0304464 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G010420, Chr19G004110, Chr20G009610, Chr24G010410 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G381300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG025760, gene_TRIDC2BG030300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G200300.1, TraesCS2B02G227700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb324630_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10579, nbis-gene-654 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5375, Zma_g6684 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-828 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1307, nbisL1-mrna-2785 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12038, nbisL1-mrna-2399 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1051, evm.TU.utg000019l.554 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002217 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3356 |
| Salicaceae | Populus euphratica | 1 | populus_peu23775 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623740 |
| Solanaceae | Solanum chilense | 1 | SOLCI000782800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009482 |