Basic Information
Locus ID:
SOLCI000770700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1324 | 186908 | 190845 | + | SOLCI000770700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 108,559.72 Da | 30.55 | 105.28 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 266 | 325 | 5.0E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 695 | 969 | 3.4E-46 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 243 | 264 | 0.12 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 3.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 68 | 4.1E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 688 | 969 | 4.05E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 233 | 593 | 2.47E-67 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 56 | 320 | 3.74E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 351 | 624 | 3.9E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 230 | 350 | 2.6E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 771 | 982 | 2.2E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 141 | 2.1E-24 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 665 | 770 | 6.0E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 229 | 4.0E-22 | IPR032675 |
| SMART | SM00220 | serkin_6 | 694 | 969 | 1.3E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 336 | 360 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 264 | 288 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 527 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 479 | 502 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 432 | 456 | 160.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 694 | 970 | 38.138493 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 815 | 827 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_015073593.1 | receptor protein kinase CLAVATA1 [Solanum pennellii] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6N2BYG9 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_002646 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology