Basic Information
Locus ID:
SOLCI000741600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold131 | 177040 | 177714 | - | SOLCI000741600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 24,890.31 Da | 71.28 | 91.38 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 163 | 206 | 1.45481E-15 | - |
| Pfam | PF13639 | Ring finger domain | 163 | 206 | 2.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 214 | 1.58E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 212 | 5.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 205 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 206 | 12.84335 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004231356.1 | RING-H2 finger protein ATL54-like [Solanum lycopersicum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2CER6 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_002576 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology