Basic Information
Locus ID:
SOLCI000741400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold131 | 172919 | 174109 | - | SOLCI000741400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 39,570.58 Da | 62.01 | 82.01 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 176 | 219 | 4.2712E-16 | - |
| Pfam | PF13639 | Ring finger domain | 176 | 219 | 9.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 225 | 1.19E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 224 | 1.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 218 | 8.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 219 | 12.931868 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 250 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015085384.1 | RING-H2 finger protein ATL54-like [Solanum pennellii] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2CIQ0 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_002574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology