Basic Information
Locus ID:
SOLCI000687200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1281 | 98078 | 105345 | + | SOLCI000687200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 146,671.19 Da | 44.31 | 88.04 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1156 | 1199 | 1.12122E-19 | - |
| CDD | cd12108 | Hr-like | 41 | 169 | 9.21147E-18 | - |
| CDD | cd12108 | Hr-like | 597 | 738 | 1.42537E-19 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 40 | 170 | 9.2E-8 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1155 | 1198 | 1.4E-9 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1204 | 1261 | 5.0E-21 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 1027 | 1101 | 1.7E-15 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1145 | 1204 | 9.32E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1093 | 1150 | 1.96E-14 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1020 | 1083 | 6.54E-14 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1150 | 1200 | 8.3E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1228 | 1263 | 2.8E-15 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 593 | 758 | 3.5E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 36 | 187 | 3.8E-22 | - |
| SMART | SM00184 | ring_2 | 1157 | 1198 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1020 | 1089 | 23.093817 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1092 | 1156 | 25.703531 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1157 | 1199 | 11.530333 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 892 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_004242165.1 | zinc finger protein BRUTUS-like At1g74770 isoform X1 [Solanum lycopersicum] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BYU2 | Zinc finger protein BRUTUS-like At1g18910 OS=Solanum chilense OX=4083 GN=EJD97_002408 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology