Basic Information
Locus ID:
SOLCI000665200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1271 | 52085 | 56002 | - | SOLCI000665200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 45,972.12 Da | 54.60 | 65.14 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 328 | 352 | 1.6E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 289 | 317 | 3.2E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 327 | 357 | 2.17E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 281 | 315 | 8.01E-8 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 279 | 318 | 4.4E-15 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 324 | 357 | 5.4E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 358 | 391 | 7.7E-9 | - |
| SMART | SM00547 | zf_4 | 363 | 387 | 0.13 | IPR001876 |
| SMART | SM00547 | zf_4 | 330 | 354 | 9.5E-8 | IPR001876 |
| SMART | SM00547 | zf_4 | 291 | 315 | 2.2E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 361 | 390 | 9.382329 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 289 | 318 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 328 | 357 | 11.042283 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 365 | 384 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 332 | 351 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 280 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_015069634.1 | zinc finger protein VAR3, chloroplastic [Solanum pennellii] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BZ03 | Zinc finger protein VAR3, chloroplastic OS=Solanum chilense OX=4083 GN=EJD97_002339 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology