Basic Information
Locus ID:
SOLCI000612100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold125 | 110438 | 111613 | - | SOLCI000612100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 45,528.67 Da | 38.61 | 98.62 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 224 | 347 | 7.5E-6 | IPR013187 |
| Pfam | PF12937 | F-box-like | 16 | 52 | 3.7E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 77 | 3.92E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 54 | 5.2E-10 | - |
| SMART | SM00256 | fbox_2 | 17 | 55 | 4.4E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 60 | 12.14691 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009758329.1 | PREDICTED: F-box only protein 8-like [Nicotiana sylvestris] | 0 |
| TrEMBL | A0A6N2CBT5 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_002171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1496, gene_23374 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015300, COCNU_07G015310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8264 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1529, evm.TU.LG22.421 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.534, evm.TU.Scaffold_5_RagTag.1577 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12069, nbisL1-mrna-12143, nbisL1-mrna-12163 ... |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.160 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15516, nbisL1-mrna-23528 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132600105, gene-LOC132602587, gene-LOC132614123 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000612100, SOLCI004908700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003485, gene-LOC107004245, gene-LOC107004251 |