Basic Information
Locus ID:
SOLCI000591400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1241 | 16763 | 22981 | + | SOLCI000591400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 110,708.52 Da | 45.65 | 103.81 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 300 | 1.05548E-18 | - |
| Pfam | PF04564 | U-box domain | 261 | 326 | 5.5E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 864 | 984 | 1.73E-12 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 500 | 833 | 1.02E-38 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 333 | 587 | 2.19E-28 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 328 | 2.36E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 623 | 1.4E-33 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 858 | 990 | 3.0E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 333 | 8.7E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 624 | 842 | 6.9E-22 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 260 | 322 | 3.2E-24 | IPR003613 |
| SMART | SM00185 | arm_5 | 786 | 827 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 360 | 400 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 443 | 484 | 350.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 699 | 740 | 440.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 567 | 609 | 1.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 526 | 566 | 3.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 861 | 901 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 905 | 945 | 37.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 329 | 26.238111 | IPR003613 |
| Coils | Coil | Coil | 191 | 218 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_015062972.1 | U-box domain-containing protein 44-like isoform X1 [Solanum pennellii] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BXQ0 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_002099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |