Basic Information
Locus ID:
SOLCI000578200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1235 | 61012 | 61764 | + | SOLCI000578200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 28,103.02 Da | 50.91 | 72.12 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 34 | 84 | 5.65234E-26 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 36 | 82 | 3.5E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 95 | 1.04E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 120 | 9.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 82 | 1.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 83 | 12.681067 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_004251855.1 | E3 ubiquitin-protein ligase RMA3 isoform X2 [Solanum lycopersicum] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C1Z5 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_002063 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology