Basic Information
Locus ID:
SOLCI000565900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold123 | 29052 | 31286 | + | SOLCI000565900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 82,820.42 Da | 39.26 | 104.91 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 47 | 84 | 6.7E-12 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 190 | 247 | 7.2E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 165 | 187 | 1.3 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 460 | 654 | 6.5E-42 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 286 | 308 | 1.0 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 440 | 734 | 1.34E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 326 | 1.43E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 530 | 739 | 2.1E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 45 | 337 | 4.0E-72 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 420 | 529 | 2.5E-23 | - |
| SMART | SM00220 | serkin_6 | 454 | 724 | 1.3E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 454 | 726 | 37.756874 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 460 | 482 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 574 | 586 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 378 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69270.1 | receptor-like protein kinase 1. RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. | 0 |
| RefSeq | XP_004237222.2 | probable LRR receptor-like serine/threonine-protein kinase RPK1 [Solanum lycopersicum] | 0 |
| Q9ZRF9 | Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana OX=3702 GN=RPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CE26 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_002000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology