Basic Information
Locus ID:
SOLCI000554100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1223 | 76732 | 81864 | + | SOLCI000554100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 53,812.62 Da | 68.75 | 60.02 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 385 | 442 | 2.1E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 215 | 270 | 1.3E-22 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 376 | 444 | 1.44E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 212 | 272 | 8.76E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 369 | 445 | 1.0E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 202 | 273 | 2.9E-26 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 213 | 271 | 3.2E-34 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 384 | 443 | 5.7E-40 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 208 | 272 | 22.825167 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 379 | 444 | 35.737244 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 212 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_004235494.1 | probable WRKY transcription factor 4 [Solanum lycopersicum] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BZS7 | WRKY transcription factor 3 OS=Solanum chilense OX=4083 GN=EJD97_001960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology