Basic Information
Locus ID:
SOLCI000543000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold12170 | 8418 | 9515 | + | SOLCI000543000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 39,896.34 Da | 36.14 | 91.42 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 102 | 363 | 7.08041E-97 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 102 | 337 | 1.7E-58 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 76 | 347 | 1.01E-88 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 69 | 365 | 3.8E-105 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 151 | 167 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 283 | 295 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 80 | 363 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 80 | 363 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | NP_001234087.1 | geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum] | 0 |
| Q43133 | Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2APA0 | Geranylgeranyl pyrophosphate synthase OS=Solanum chilense OX=4083 GN=EJD97_001923 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology