Basic Information
Locus ID:
SOLCI000516200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Tetratricopeptide repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1204 | 36161 | 56335 | + | SOLCI000516200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 48,355.85 Da | 33.85 | 77.36 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13432 | Tetratricopeptide repeat | 253 | 301 | 0.0027 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 228 | 334 | 5.6E-9 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 319 | 438 | 8.93E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 200 | 441 | 4.1E-23 | IPR011990 |
| SMART | SM00028 | tpr_5 | 242 | 275 | 90.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 401 | 434 | 24.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 276 | 309 | 260.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 367 | 400 | 120.0 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 367 | 400 | 8.6734 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78915.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_004235499.1 | uncharacterized protein LOC101262497 isoform X1 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2C2D6 | TPR_REGION domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_001835 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17942 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6612 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028585 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26786, Sbi_jg33780 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8473 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011712 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73643, Sgl77106 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007455, gene:ENSEOMG00000011107 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007800, CQ.Regalona.r1.9BG0008200 |
| Apiaceae | Apium graveolens | 1 | Ag4G00194 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G007920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705755 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G30247 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78915.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018805m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33940.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g050530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1066 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1109 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12440 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0771s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g22510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5022 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.674 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019883 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37007, Lb5G28983 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.842, BH03.971, CH03.1137 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0561320, gene-QOZ80_7BG0592530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_008997 |
| Poaceae | Oryza coarctata | 2 | Oco13G005040, Oco14G006010 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g18720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G124200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305557 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr28G003540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G762900, Tel4E01G069400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG064220, gene_TRIDC2BG068450 |
| Poaceae | Triticum aestivum | 1 | TraesCS2B02G470800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb305180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49374 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4939 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1219, evm.TU.LG12.555 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02920 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10247 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13116 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17762 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.919 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002950 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3089 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11473 |
| Salicaceae | Populus euphratica | 1 | populus_peu05950 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633605 |
| Solanaceae | Solanum chilense | 1 | SOLCI000516200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014356 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_564 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01020.v3.1 |