Basic Information
Locus ID:
SOLCI000515900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1204 | 18748 | 21118 | + | SOLCI000515900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 81,716.08 Da | 41.83 | 94.49 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 105 | 151 | 2.1E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 467 | 725 | 1.1E-30 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 204 | 264 | 2.4E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 128 | 296 | 5.67E-28 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 468 | 730 | 1.27E-52 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 275 | 320 | 1.1E-6 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 540 | 741 | 1.6E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 224 | 274 | 1.1E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 106 | 223 | 1.3E-20 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 431 | 539 | 3.9E-19 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 464 | 731 | 27.35425 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 439 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35390.1 | Leucine-rich repeat protein kinase family protein. Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis. | 0 |
| RefSeq | XP_015069232.2 | pollen receptor-like kinase 1 [Solanum pennellii] | 0 |
| Q40902 | Pollen receptor-like kinase 1 OS=Petunia integrifolia OX=4103 GN=PRK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C0R2 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_001833 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology