Basic Information
Locus ID:
SOLCI000502100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold12 | 47816 | 51761 | - | SOLCI000502100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 114,881.61 Da | 32.80 | 101.18 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 410 | 467 | 1.7E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 143 | 200 | 4.3E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 783 | 1005 | 2.5E-28 | IPR001245 |
| Pfam | PF13516 | Leucine Rich repeat | 293 | 307 | 1.7 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 362 | 378 | 0.54 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 479 | 540 | 5.5E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 67 | 9.4E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 379 | 1.53E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 782 | 1057 | 1.68E-46 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 271 | 593 | 2.75E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 764 | 856 | 9.5E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 259 | 2.4E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 858 | 1061 | 3.1E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 183 | 3.2E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 452 | 627 | 1.3E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 260 | 451 | 7.5E-40 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 117 | 141 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 213 | 237 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 526 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 212 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 527 | 550 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 188 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 313 | 98.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 293 | 315 | 7.619546 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 779 | 1061 | 27.509724 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 505 | 527 | 7.527138 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 503 | 516 | 5.9E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 168 | 181 | 5.9E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 692 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20940.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_015066192.1 | probable LRR receptor-like serine/threonine-protein kinase At4g20940 isoform X1 [Solanum pennellii] | 0 |
| C0LGQ9 | LRR receptor-like serine/threonine-protein kinase GHR1 OS=Arabidopsis thaliana OX=3702 GN=GHR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2CFR6 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_001774 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20827, jg22328 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16176 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11475, Sbi_jg46404 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20726 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005258 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55880, Sgl61071 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013144, gene:ENSEOMG00000037254 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010770, CQ.Regalona.r1.9AG0013850 |
| Apiaceae | Apium graveolens | 1 | Ag6G01169 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G008910, scaffold013743G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710493, gene-LOC103717919 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1946.V1.1, AsparagusV1_07.3470.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G16277 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024279m.g.v1.0, Thhalv10024290m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g022150.2N, BniB05g016060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0566 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0670 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g02650, gene.Cymno17g04260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g19370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11391 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.479 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038561 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16865 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.213, BH03.277, CH03.340 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0555450, gene-QOZ80_7BG0586450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0153670.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042472 |
| Poaceae | Oryza coarctata | 2 | Oco13G001380, Oco14G001450 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g05190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G032600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303516 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G017990, Chr24G001570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G467900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG032760, gene_TRIDC2BG039460 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G253500.1, TraesCS2B02G273100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb117610_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35791, nbis-gene-35793, nbis-gene-51793 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4727, Zma_g5962 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1920 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.983 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16833 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13067 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17281 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.140 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012330 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8622 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22988 |
| Salicaceae | Populus euphratica | 2 | populus_peu00066, populus_peu17139 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625180, gene-LOC132631564 |
| Solanaceae | Solanum chilense | 2 | SOLCI000502100, SOLCI006826400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011286, gene-LOC107011652 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13108_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0590 |
| Zosteraceae | Zostera marina | 2 | Zosma03g23840.v3.1, Zosma05g19560.v3.1 |