Basic Information
Locus ID:
SOLCI000495900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1197 | 143672 | 146777 | - | SOLCI000495900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 57,821.10 Da | 54.17 | 65.94 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 147 | 199 | 1.26177E-29 | - |
| Pfam | PF12315 | Protein DA1 | 296 | 510 | 1.3E-104 | IPR022087 |
| Pfam | PF00412 | LIM domain | 147 | 202 | 1.7E-11 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 140 | 172 | 1.47E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 173 | 227 | 3.51E-9 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 142 | 219 | 3.0E-16 | - |
| SMART | SM00132 | lim_4 | 146 | 198 | 2.6E-15 | IPR001781 |
| SMART | SM00726 | uim | 70 | 89 | 5.8 | IPR003903 |
| SMART | SM00726 | uim | 101 | 120 | 3.7 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 145 | 205 | 12.5632 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 101 | 120 | 8.517784 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 147 | 181 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 462 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_010316180.1 | protein DA1-related 1 [Solanum lycopersicum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6N2C0U9 | LIM zinc-binding domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_001735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology