Basic Information
Locus ID:
SOLCI000495700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1197 | 137254 | 139191 | + | SOLCI000495700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 70,301.48 Da | 43.12 | 87.81 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 188 | 232 | 2.7E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 380 | 620 | 1.1E-38 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 338 | 620 | 6.01E-63 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 422 | 639 | 2.9E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 322 | 420 | 4.4E-15 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 171 | 242 | 1.7E-5 | IPR036779 |
| SMART | SM00257 | LysM_2 | 121 | 167 | 3.1 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 232 | 0.21 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 282 | 625 | 32.343552 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 231 | 10.407601 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 261 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_004232089.1 | lysM domain receptor-like kinase 4 [Solanum lycopersicum] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BXE7 | LysM domain receptor-like kinase 4 OS=Solanum chilense OX=4083 GN=EJD97_001733 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology