Basic Information
Locus ID:
SOLCI000446100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold11727 | 8936 | 9343 | - | SOLCI000446100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 15,533.89 Da | 61.32 | 85.11 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 83 | 127 | 2.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 132 | 4.42E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 130 | 2.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 84 | 126 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 84 | 127 | 12.25323 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 84 | 126 | - | IPR019786 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016509066.1 | PREDICTED: RING-H2 finger protein ATL18-like [Nicotiana tabacum] | 0 |
| Q9SZL4 | RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AM46 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_001600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21858 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21780 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009898 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55719, Sgl60933 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036867, gene:ENSEOMG00000050832 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004820, CQ.Regalona.r1.9AG0019800 |
| Asteraceae | Flaveria trinervia | 7 | Ftri18G16887, Ftri18G33262, Ftri1G07426, Ftri1G12042 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g066530.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039059, Pov_00039061, Pov_00039062 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.344 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4 |
| Solanaceae | Solanum chilense | 2 | SOLCI000446100, SOLCI004491000 |