Basic Information
Locus ID:
SOLCI000407200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
PRK1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1154 | 41219 | 44318 | + | SOLCI000407200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 74,767.83 Da | 32.40 | 90.19 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 80 | 2.1E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 139 | 192 | 2.2E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 372 | 638 | 1.2E-26 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 73 | 225 | 3.14E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 372 | 642 | 7.44E-46 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 334 | 443 | 3.8E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 444 | 658 | 1.3E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 248 | 5.0E-38 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 368 | 653 | 24.612253 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 374 | 396 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 307 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07040.1 | Leucine-rich repeat protein kinase family protein. Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. | 0 |
| RefSeq | NP_001233883.1 | receptor-like protein kinase precursor [Solanum lycopersicum] | 0 |
| Q84JQ4 | Pollen receptor-like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=PRK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C2W9 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_001469 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology