Basic Information
Locus ID:
SOLCI000383500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1143 | 15137 | 24088 | + | SOLCI000383500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 172,936.03 Da | 48.74 | 92.61 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1158 | 1551 | 1.21242E-110 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1206 | 1553 | 1.5E-77 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1153 | 1546 | 2.22E-89 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 81 | 507 | 8.35E-32 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 84 | 530 | 1.2E-42 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1437 | 1551 | 6.7E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1103 | 1325 | 1.3E-35 | - |
| SMART | SM00119 | hect_3 | 1170 | 1553 | 2.7E-90 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1172 | 1553 | 60.164028 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 70 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010326023.1 | E3 ubiquitin-protein ligase UPL4 [Solanum lycopersicum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2C0T9 | HECT-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_001364 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology