Basic Information
Locus ID:
SOLCI000351300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold113 | 228125 | 237279 | - | SOLCI000351300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 86,216.28 Da | 49.91 | 75.37 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 162 | 467 | 1.16765E-163 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 163 | 466 | 1.7E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 67 | 104 | 2.4E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 64 | 106 | 2.44E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 160 | 469 | 6.08E-87 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 55 | 109 | 7.2E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 160 | 475 | 3.0E-89 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 67 | 104 | 11.697731 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 163 | 469 | 49.315945 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 67 | 104 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 164 | 179 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 678 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_015085440.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Solanum pennellii] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2CIA2 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Solanum chilense OX=4083 GN=EJD97_001267 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology