Basic Information
Locus ID:
SOLCI000318900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1117 | 11599 | 16613 | - | SOLCI000318900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 46,589.87 Da | 46.03 | 91.95 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 250 | 380 | 2.51446E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 41 | 239 | 5.54418E-137 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 62 | 223 | 2.3E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 263 | 371 | 1.1E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 106 | 391 | 1.21E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 246 | 410 | 1.4E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 27 | 245 | 1.2E-67 | IPR027417 |
| SMART | SM00490 | helicmild6 | 290 | 371 | 4.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 56 | 253 | 4.2E-58 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | 25.491943 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 37 | 65 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | 29.924574 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 184 | 192 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006342502.1 | PREDICTED: eukaryotic initiation factor 4A-2-like [Solanum tuberosum] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | M1CUZ8 | Eukaryotic initiation factor 4A-2 OS=Solanum tuberosum OX=4113 GN=102594403 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology