Basic Information
Locus ID:
SOLCI000219900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold10772 | 2847 | 11409 | + | SOLCI000219900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 36,482.25 Da | 46.91 | 95.08 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 36 | 84 | 6.67523E-16 | - |
| Pfam | PF12906 | RING-variant domain | 36 | 83 | 1.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 88 | 1.66E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 97 | 1.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 35 | 84 | 8.2E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 28 | 90 | 20.528173 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015071795.1 | uncharacterized protein LOC107015882 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2AN48 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000879 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology