Basic Information
Locus ID:
SOLCI000178200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Peptidyl-tRNA hydrolase ICT1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold10611 | 840 | 6716 | + | SOLCI000178200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.36 | 27,625.67 Da | 20.74 | 79.64 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF110916 | Peptidyl-tRNA hydrolase domain-like | 145 | 212 | 1.18E-7 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 108 | 222 | 3.6E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 143 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62850.4 | - | 0 |
| RefSeq | XP_015085897.1 | uncharacterized protein LOC107029095 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2AVK9 | IF3_N domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23381, jg37217 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14830 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003558 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4640, Sbi_jg7432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12596 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001352 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51782, Sgl57090 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004600, gene:ENSEOMG00000021773 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009190, CQ.Regalona.r1.5BG0009550 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092280 |
| Apiaceae | Apium graveolens | 1 | Ag6G01760 |
| Arecaceae | Cocos nucifera | 2 | scaffold004347G000010, scaffold005979G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706573, gene-LOC103713401, gene-LOC120107072 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.119.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G34136 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G62850.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023661m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g01760.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g021690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0580 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0686 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0012s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g05800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1261 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10230, Lb3G16598 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4340, BH01.4637, CH01.4959 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0241040, gene-QOZ80_3BG0287080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0391760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069532 |
| Poaceae | Oryza coarctata | 2 | Oco05G008170, Oco06G008450 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g14510.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G417800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102050 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G029510, Chr12G010010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G389000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG011020, gene_TRIDC4BG039550 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G080100.1, TraesCS4B02G223900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb010680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.233, evm.TU.LG17.226 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.297 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18081 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3948 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8420 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.192 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018346 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10789 |
| Salicaceae | Populus euphratica | 2 | populus_peu03437, populus_peu34271 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609841, gene-LOC132635043 |
| Solanaceae | Solanum chilense | 2 | SOLCI000178200, SOLCI004053100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026777, gene-LOC107029095 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14106 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2869 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02940.v3.1 |