Basic Information
Locus ID:
SOLCI000156400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1052 | 52464 | 53810 | - | SOLCI000156400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 41,747.02 Da | 49.75 | 71.01 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 315 | 355 | 9.2E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 47 | 107 | 3.79E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 112 | 233 | 5.1E-14 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 310 | 359 | 2.62E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 305 | 359 | 9.0E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 96 | 252 | 3.5E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 313 | 355 | 11.066857 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 385 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_004239208.1 | F-box protein At1g67340 [Solanum lycopersicum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C4F3 | MYND-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000634 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology